PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00500.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 277aa    MW: 30242.4 Da    PI: 4.926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00500.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1779128255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++g
  Rsa1.0_00500.1_g00010.1  79 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVASLAIKG 128
                              69****998.**********843...6********************9988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3179137IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2179136IPR016177DNA-binding domain
PROSITE profilePS5103222.77479136IPR001471AP2/ERF domain
PfamPF008475.1E-1279128IPR001471AP2/ERF domain
SMARTSM003804.4E-3779142IPR001471AP2/ERF domain
PRINTSPR003672.3E-108091IPR001471AP2/ERF domain
CDDcd000188.31E-3380138No hitNo description
PRINTSPR003672.3E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
METIEKSVSQ VTLTSSAIFT VSSSAAPASL YSSTTSSSSS SSTTYNSKRK ASPRSLEVHE  60
DDDNVVKRRK ISGGDKHPTY RGVRMRSWGK WVSEIREPRK KSRIWLGTYP TAEMAARAHD  120
VASLAIKGTT AHLNFPELSG ELPRPVTNSP KDIQAAATAA AVNWQDFGAN SLRVSSSDVA  180
ESAEAEPSRV VMAQSLSGSA GFSSDINSQD LSETSCASTT SFAEKDNEEE KLFDLPDLFT  240
DEMIIRNDVF CYYSSTWQLC GADPGYRLEE PFFCLND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1580136360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14769KRKASPRSLEVHEDDDNVVKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133691.11e-164PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ71e-116ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A078D1Z81e-165A0A078D1Z8_BRANA; BnaA03g20950D protein
STRINGBra000366.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-102ERF family protein